Please note: I have not had time to update this page consistently since about mid-2010, so that a number of more recent publications do not yet appear here! I have been adding a few newer ones in a spotty and sporadic manner, which is rather unfortunate. If you are searching for one of my newer publications, check carboncopies.org or please contact me directly. I hope to update this page very soon!
Refereed Journal ArticlesKoene, R.A. (2014). Methodical Support for Informational Analysis of Mind: A Review of Igor Aleksander's and Helen Morton's ``Aristotle's Laptop: The Discovery of Our Informational Mind''. International Journal of Machine Consciousness. Vol 6:1, pp.41-43, doi: 10.1142/S179384301440006X
electronic reprint: PDF (68K)
reference to the published article at the International Journal of Machine Consciousness
[...SEVERAL MISSING REFERENCES BELONG HERE...] Koene, R.A. (2012). Fundamentals of Whole Brain Emulation: State, Transition and Update Representations. Special Issue of the International Journal on Machine Consciousness. Vol.4(1), doi: 10.1142/S1793843012500023.
electronic reprint: PDF (3900K) reference to the published article at the International Journal of Machine Consciousness
Koene, R.A. (2012). Experimental Research in Whole Brain Emulation: The Need for Innovative In-Vivo Measurement Techniques. Special Issue of the International Journal on Machine Consciousness. Vol.4(1), doi: 10.1142/S1793843012500047.
Koene, R.A., Tijms, B., van Hees, P., Postma, F., de Ridder, S., Ramakers, G., van Pelt, J. and van Ooyen, A. (2009). NETMORPH: A framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. Vol.7(3), pp.195-210. Neuroinformatics Advanced Access published on August 12, 2009, doi: 10.1007/s12021-009-9052-3.
Koene, R.A. and Hasselmo, M.E. (2008). Reversed and forward buffering of behavioral spike sequences enables retrospective and prospective retrieval in hippocampal regions CA3 and CA1. Neural Networks. Vol.21(2-3), pp.276-288. Neural Networks Advanced Access published on December 11, 2007, doi:10.1016/j.neunet.2007.12.029.
Koene, R.A. and Hasselmo, M.E. (2008). Consequences of parameter differences in a model of short-term persistent spiking buffers provided by pyramidal cells in entorhinal cortex. Brain Research. Vol.1202C, pp.54-67. Brain Research Advanced Access published on July 17, 2007, doi:10.1016/j.brainres.2007.06.067.
Koene, R.A. and Hasselmo, M.E. (2007). First-in-first-out item replacement in a model of short-term memory based on persistent spiking. Cerebral Cortex.. Vol.17(8), pp.1766-1781. Cerebral Cortex Advanced Access published on October 9, 2006, doi: 10.1093/cercor/bhl088.
McGaughy, J., Koene, R.A., Eichenbaum, H. and Hasselmo, M.E. (2005). Cholinergic deafferentation of the entorhinal cortex in rats impairs encoding of novel but not familiar stimuli in a delayed nonmatch-to-sample task.
Journal of Neuroscience. Vol.25(44), pp.10273-10281.
Koene, R.A. and Hasselmo, M.E. (2005). An integrate and fire model of prefrontal cortex neuronal activity during performance of goal-directed decision making. Cerebral Cortex. Vol.15:12, pp.1964-1981. (Cerebral Cortex Advanced Access published April 27, 2005.)
Koene, R.A., Gorchetchnikov, A., Cannon, R.C. and Hasselmo, M.E. (2003). Modeling goal-directed spatial navigation in the rat based on physiological data from the hippocampal formation. Neural Networks. Vol. 16:5-6, pp. 577-584.
Cannon, R.C., Hasselmo, M.E. and Koene, R.A. (2003). From biophysics to behavior: Catacomb2 and the Design of Biologically Plausable Models for Spatial Navigation. Neuroinformatics. Vol. 1:1, pp. 3-42.
Koene, R. and Takane, Y. (1999). Discriminant component pruning. Regularization and interpretation of multi-layered back-propagation networks. Neural Computation. Vol. 11, pp. 783-802.
Peer Reviewed Articles in Conference Proceedings, Book Chapters and Collections
Koene, R.A. (2014). Feasible Mind Uploading. In Intelligence Unbound: The Future of Uploaded and Machine Minds. Eds. Blackford, R. and Broderick, D. Wiley-Blackwell, Oxford, UK. electronic reprint: PDF (934K), presentation slides reference to the published article at the journal Lecture Notes in Computer Science
reference to the AGI-12 web site
Koene, R.A. (2012). A Window of Opportunity. In H+ Magazine. May, 2012.
Koene, R.A. (2012). Embracing competitive balance: The case for substrate-independent minds and whole brain emulation. In The Singularity Hypothesis: A Scientific and Philosophical Assessment. Eds. Eden, A., Søraker, J., Moor, J., and Steinhart, E. Springer, New York, NY. Koene, R.A. (2012). Emulation versus Understanding: A response to Dennis Bray "Brain versus Machine". In The Singularity Hypothesis: A Scientific and Philosophical Assessment. Eds. Eden, A., Søraker, J., Moor, J., and Steinhart, E. Springer, New York, NY.
Koene, R.A. (2011). AGI and Neuroscience: Open Sourcing the Brain. Presented at the Fourth Conference on Artificial General Intelligence (AGI2011). August, 2011. Mountain View, CA.
Koene, R.A. (2011). AGI and Neuroscience: Open Sourcing the Brain. In the Proceedings of the Fourth Conference on Artificial General Intelligence (AGI2011). August, 2011. Mountain View, CA. Reduced version.
Oses, N., Hoffmann, M. and Koene, R.A. (2010). Embodied moving target seeking with prediction and planning. In Proceedings of the 5th International Conference on Hybrid Artificial Intelligence Systems (HAIS2010). June, 2010. San Sebastian, Spain. (submitted)
Nijboer, F., Hoffmann, U., Morin, F., Carmien, S., Leon, E. and Koene, R.A. (2009). Affective Brain-Computer Interfaces: Psychophysiological Markers of Emotion in Healthy People and People with Amyotrophic Lateral Sclerosis. In Proceedings of the Workshop on Affective Brain-Computer Interfaces & IEEE International Workshop on Social Signal Processing ABCI 2009. Vol.II, pp.1-11.
Carmien, S. and Koene, R.A. (2009). Distributed Intelligence and Scaffolding in Support of Cognitive Health. In Proceedings of the 3rd International Conference on Human-Computer Interaction (HCII 09) in the parallel session 'Cognitive Accessibility and Cognitive Support' in the 5th International Conference on Universal Access in Human-Computer Interaction (UAHCI). Vol.5614, pp.334-343.
Carmien, S., Cavallaro, F. and Koene, R.A. (2009). 'Senior Moments': Loss and Context. In Proceedings of the 2nd International Conference on PErvasive Technologies Related to Assistive Environments (PETRA09). Workshop on 'Affect and Behavior Related Assistance in Support for the Elderly'.
Koene, R.A. (2009). Assessing the Abstraction Level for Neuroprosthesis: Proposing a Comparison of Functional Simulations in Neuronal Circuitry Generated to Resemble Large-Scale High-Resolution Reconstructions. In NER '09. 4th International IEEE/EMBS Conference on Neural Engineering, pp.92-95, doi: 10.1109/NER.2009.5109242.
Koene, R.A. and Hasselmo, M.E. (2007). A reversing buffer mechanism that enables instances of retrospective activity in hippocampal regions CA3 and CA1. In Proceedings of the International Joint Conference on Neural Networks (IJCNN2007).
Koene, R.A. and Hasselmo, M.E. (2007). Connectionist Memory Models of Hippocampal Function. In the Learning and Memory: A Comprehensive Reference. (In press). Elsevier.
Koene, R.A. and Hasselmo, M.E. (2006). Hippocampus: Computational models. In the New Encyclopedia of Neuroscience. (In press). Elsevier.
Koene, R.A. (2006). Scope and Resolution in Neural Prosthetics and Special Concerns for the Emulation of a Whole Brain. Journal of Geoethical Nanotechnology.1(4).
Koene, R.A. (2006). Short-term memory based on intrinsic neuronal dynamics during on-line acquisition of context dependent memory.
(Neurocomputing, In Review).
Koene, R.A. and Hasselmo, M.E. (2005). An integrate and fire model of prefrontal cortex provides a biological implementation of action selection in reinforcement learning theory that reuses known representations. In Proceedings of the International Joint Conference on Neural Networks (IJCNN2005).
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2003). Goal-directed spatial navigation of the rat depends on phases of theta oscillation in hippocampal circuitry. In Proceedings of the International Joint Conference on Neural Networks (IJCNN2003).
Hasselmo, M.E., Cannon, R.C. and Koene, R.A. (2002). A simulation of parahippocampal and hippocampal structures guiding spatial navigation of a virtual rat in a virtual environment: A functional framework for theta theory. In: Witter, M P.and Wouterlood, F.G. (eds.) The Parahippocampal Region: Organization and Role of Cognitive Functions. Oxford University Press: Oxford. pp.139-161.
DissertationsKoene, R.A. (2001). Functional requirements determine relevant ingredients to model for on-line acquisition of context dependent memory. Ph.D. thesis, McGill Univeristy, Montreal, Canada.electronic reprint and additional resources: PDF (1879K)
Koene, R.A. (1995). Extracting Knowledge in Terms of Rules from Trained Neural Networks. M.Sc. thesis, Delft University of Technology, Delft, The Netherlands.
Invited TalksKoene, R.A. (2012). Machines in Minds to Reverse Engineer the Machine that is Mind. Presented at TEDxTallinn 2012. May, 2012. Tallinn, Estonia.electronic reprint: Presentation Video + Slides reference to the web site of TEDxTallinn
Koene, R.A. (2010). Wole Brain Emulation: Issues of scope and resolution, and the need for new methods of in-vivo recording. Presented at the Third Conference on Artificial General Intelligence (AGI2010). March, 2010. Lugano, Switzerland.
Koene, R.A. (2010). Neural mechanisms of reinforcement learning: How spreading activity in the prefrontal cortex can implement RL for goal-directed tasks. Presented at the Third Conference on Artificial General Intelligence (AGI2010). March, 2010. Lugano, Switzerland.
Koene, R.A. (2009). The time is now: As a species and as individuals we need whole brain emulation. Presented at the Singularity Summit 2009. October, 2009. New York, NY.
Koene, R.A. (2009). From Wheelchairs to Neural Interfaces in a Virtual Brain Laboratory. Presented at the Center for Adaptive Neural Systems Symposium on Co-Adaptive Learning: Adaptive Technology for the Aging (ANS2009). January, 2009. Tempe, AZ.
Koene, R.A. (2008). Assessing the functional significance of errors and omissions by automated network reconstruction in phantom data generated with NETMORPH. Presented at the minisymposium High-Throughput Microscopy and Computational/Theoretical Challenges in the Analysis of Neural Circuit Structure of the 2008 Annual Meeting of the Society for Neuroscience. November, 2008. Washington, D.C.
Koene, R.A. (2008). 2nd Whole Brain Emulation Social of the Society for Neural Prosthetics and Whole Brain Emulation Science. Presented at the InnerSpace Foundation Satellite Symposium at {SFN2008}. November, 2008. Washington, D.C.
Koene, R.A. (2008). Neuroengineering: An intimate communication with the brain. Presented at the Fatronik - University of Tubingen Research Retreat. July, 2008. Fatronik. San Sebastian, Spain.
Koene, R.A., van Pelt, J. and van Ooyen, A. (2008). NETMORPH DEMO at INCF booth FENS 2008. Presented at the 6th FENS Forum of European Neuroscience. Geneva, Switzerland.
Koene, R.A. and Hasselmo, M.E. and Stern, C. and Kahana, M. and Eichenbaum, H.B. (2008). Learning and Episodic Memory: Encoding and Retrieval. Presented at the CELEST EASRB Meeting. February, 2008. Center of Excellence for Learning in Education, Science, and Technology. Boston, MA.
Koene, R.A. (2008). Cognitive Facilitation and Memory Access. Presented at the Medical Center of the University of Navarre (CIMA). January, 2008. Pamplona, Spain.
Koene, R.A. (2007). Accessing Memory by Serial Reconstruction. Presented at the InnerSpace Foundation Neuroengineering Meeting. Boston, MA.
Koene, R.A. (2007). Spike timing dependent mechanisms in cortical function and the involvement of specific neuron morphology in large scale neuronal networks. Presented at the Laboratory of Theoretical Neurobiology of the University of Antwerp. Antwerp, Belgium.
Koene, R.A. (2007). Three challenges in whole brain neuroscience. Verifying automated reconstruction methods by generating virtual known network data. Presented at the University of Oxford Future of Humanity Institute Whole Brain Emulation Workshop 2007. Faculty of Philosophy and James Martin 21st Century School at Oxford. Oxford, U.K.
Koene, R.A. (2006). Scope and Resolution in Neural Prosthetics and Special Concerns for the Emulation of a Whole Brain. Presented at the 2nd Annual Workshop on Geoethical Nanotechnology. Lincoln, Vermont.
Koene, R.A. (2004). Short-term memory. Presented at the 2004 Annual Meeting of the Group on Action and Perception (GAP). London, Ontario.
Koene, R.A. (2004). Design-based modeling of neurophysiology and environment gives insight into neuronal functions of goal-directed behavior. Presented at the Netherlands Institute for Brain Research (NIBR). Amsterdam, Netherlands.
Koene, R.A. (1996). The Extraction of Rules from Neural Networks with the Knowledgetron Algorithm. Presented at the Biophysics Meeting of the University of Nijmegen. Nijmegen, Netherlands. Interviews and AppearancesKoene, R.A. interviewed by Kruel, A. (2013). Randal Koene On Cryonics. Kruel.Co, January 16, 2013.
electronic reprint: PDF (316K)
reference to the web site of the article at Kruel.Co.
Koene, R.A. interviewed by Goertzel, B. (2011). Randal Koene on Substrate-Independent Minds. H+ Magazine. August 31, 2011.
electronic reprint: PDF (1251K) reference to the web site of hplusmagazine.com.
Koene, R.A. (2011). Achieving substrate-independent minds: no, we cannot 'copy' brains. KurzweilAI.net. 24 August, 2011.
Koene, R.A. interviewed by Olson, S. (2011). Are substrate-independent minds possible? NextBigFuture.com. August 22, 2011.
Koene, R.A. (2011). Pattern survival versus Gene survival. KurzweilAI.net. 11 February, 2011.
Koene, R.A. appearance in article by Halpern, D. (2009). About the Singularity. GQ Magazine. New York, NY.
Koene, R.A. interviewed by Loew, J. (2009). All about neural prostheses, mind uploading, and brain emulation. Sunday Evening Update of ImmInst.org. October 25, 2009.
Koene, R.A. appearance in article by Rein, L. (2009). Singularity Summit - Anders Sandberg and Randal Koene On Whole Brain Emulation. H+ Magazine, Editor's Blog. San Jose, CA.
Koene, R.A. interviewed by Orban, D. (2009). Randal Koene on Whole Brain Emulation. DavidOrban.com.
Koene, R.A. interviewed (2009). About the Department of Neuroengineering in the Health Unit of the Tecnalia Research Centers. La Razon (newspaper, Spanish). Madrid, Spain.
Koene, R.A. interviewed by Zucca, K. (1997). Losing your mind? Upload your brain and gain eternal life. The Link (newspaper). Montreal: Concordia University.
Koene, R.A. interviewed by Mesley, W. and Harbron, A. (1996). Wired Flesh. Undercurrents on CBC Television. November 29, 1996. Montreal, Canada.
LecturesKoene, R.A. (2007). Introduction to Cognitive Psychology. Lecture series given in course CAS PS336 in Fall 2007 at Boston University. Boston, MA.electronic reprint: reference to the web site of CAS PS336 Introduction to Cognitive Psychology Fall 2007 on Boston University CourseInfo
Koene, R.A. (2007). Computational Modeling: Neural Morphogenesis and Network Development. Lecture given at the NEURoVERS-it Workshop on Computational Modeling. Amsterdam, Netherlands.
Oral PresentationsKoene, R.A. (2009). Obtaining in-vivo dynamic state and post-mortem neuronal circuit structure at large scale and high resolution. Presented at the Thirteenth International Conference on Cognitive and Neural Systems (ICCNS2009). Boston, MA.electronic reprint: abstract PDF (46K), Powerpoint (53546K), PDF (1767K) reference to the web site of the Thirteenth International Conference on Cognitive and Neural Systems (ICCNS2009).
Koene, R.A., Postma, F., van Pelt, J. and van Ooyen, A. (2008). Stochastic generation of large scale neuronal networks for the study of structural change in neuronal cell cultures and slice. Presented at the July 2008, Review Meeting of Neurovers-IT (Marie-Curie Program). Amsterdam, Netherlands.
Koene, R.A. (2007). Large scale high resolution network generation: Producing known validation sets for serial reconstruction methods that use histological images of neural tissue. Presented at the International Conference on Complex Systems 2007. Boston, MA.
Koene, R.A. (2007). NETMORPH. Presented at the May 2007 Meeting of the Center for Neurogenomics and Cognitive Research (CNCR). Amsterdam, Netherlands.
Koene, R.A. and Hasselmo, M.E. (2007). A reversing buffer mechanism that enables instances of retrospective activity in hippocampal regions CA3 and CA1. Presented at the 2007 International Joint Conference on Neural Networks (IJCNN2007). Orlando, FL.
Koene, R.A. (2007). NETMORPH: Technical. Presented at the Center for Neurogenomics and Cognitive Research (CNCR). Amsterdam, Netherlands.
Koene, R.A. and Hasselmo, M.E. (2006). Short-term buffers sustained by intrinsic spiking in the entorhinal cortex. Presented at the Computational Cognitive Neuroscience Conference 2006. Houston, TX.
Koene, R.A. (2006). The network generator: NETMORPH present and future. Presented at the October 2006 Meeting of the Computational Analysis of Spatiotemporal Patterns of Activity (CASPAN) Group. Amsterdam, Netherlands.
van Pelt, J., Koene, R.A., van Ooyen, A., Vajda, I., Uylings, H. and Ramakers, G. (2006). Modeling the development of neurons and neuronal networks. Presented at the Modeling the Brain's Labyrinth Meeting (MoBL2006). Fodele Beach (Crete), Greece.
van Ooyen, A. and Koene, R.A. (2006). Models of neuronal network development. Presented at the Workshop on Mathematical Models of Development and Learning in the Nervous System. University of Edinburgh, UK.
Koene, R.A. and Hasselmo, M.E. (2006). Encoding episodes in a specific temporal context depends on the reduction of interference by extending representations in dentate gyrus. Presented at the Tenth International Conference on Cognitive and Neural Systems (ICCNS2006). Boston, Massachusetts.
Koene, R.A. (2005). Simulating fiber direction in culture and cortical layers. Presented at the December 2005 Meeting of the Computational Analysis of Spatiotemporal Patterns of Activity (CASPAN) Group. Amsterdam, Netherlands.
Koene, R.A. and Hasselmo, M.E. (2005). Decision making with an integrate-and-fire model that encodes and retrieves temporal context in hippocampus and dentate gyrus. Presented at the 2005 Annual Meeting of the Society for Neuroscience (author was unable to present).
Koene, R.A. (2005). Fibre to synapses to connectivity. Presented at the September 2005 Meeting of the Computational Analysis of Spatiotemporal Patterns of Activity (CASPAN) Group. Amsterdam, Netherlands.
Koene, R.A. (2005). Improving Network Generation to Produce Structure that Resembles Data from Culture. Presented at the May 2005 Meeting of the Computational Analysis of Spatiotemporal Patterns of Activity (CASPAN) Group. Amsterdam, Netherlands.
Koene, R.A. (2005). Simulating Activity in Large Scale Neural Networks with Spatial Detail: A Network Generation Framework. Presented at the February 2005 Meeting of the Computational Analysis of Spatiotemporal Patterns of Activity in Neuronal Networks (CASPAN) Group. Amsterdam, Netherlands.
Koene, R.A. and Hasselmo, M.E. (2004). An integrate and fire model of minicolumns in prefrontal cortex explains selective firing of neurons during goal-directed behavior. Presented at the 2004 Annual Meeting of the Society for Neuroscience.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2004). Goal directed behavior guided by the output of a spiking neuron model of prefrontal cortical function. Presented at the Eighth International Conference on Cognitive and Neural Systems (ICCNS2004). Boston, Massachusetts.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2003). Modeling delayed spatial alternation behavior in the rat using a combined model of prefrontal cortex and medial temporal episodic memory function. Presented at the 2003 Annual Meeting of the Society for Neuroscience. 28: 584.9.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2003). Goal-directed spatial navigation depends on theta oscillations in hippocampal circuitry. Presented at the International Joint Conference on Neural Networks (IJCNN2003). Portland, Oregon.
Koene, R.A. (2003). A multi-phase model of relational knowledge acquisition. Presented at the Ph.D. Oral Defense. McGill University, Montreal, Canada.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2002). Exploring the Virtual Rat I-IV. Presented at Seminars of the Boston University Laboratory of Computational Neurophysiology. Boston, Massachusetts.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2002). Simulation of single unit recording data in a neural simulation guiding movement of a virtual rat in a virtual environment. In Proceedings of the 2002 Computational Neuroscience Meeting (CNS*02). Chicago, Illinois.
Koene, R.A., Takane, Y. and Kiers, H.A.L. (1999). Nonlinear Discriminant Component Pruning of Backpropagation Neural Networks. Presented at the 1999 St.Helene Quantitative Psychology Retreat. St.Helene, QC, Canada.
Koene, R.A. and Takane, Y. (1998). Discriminant Component Pruning: Effective Regularization and Improved Interpretability of Back-propagation Neural Networks. Presented at the Brain, Behavior and Cognitive Science Conference (BBCS1998). Carleton University, Ottawa.
Koene, R.A. (1998). Evaluating the Influence of Implementational Parameters in Networks of Spiking Neurons. Presented at Structural Equation Models. McGill University, Montreal.
Koene, R.A. (1998). Modeling with Spiking Neurons. Presented at the Laboratory for Natural and Simulated Cognition. McGill University, Montreal.
Koene, R.A. and Takane, Y. (1997). Disciminant Component Pruning and Network Interpretation. Presented at the Laboratory for Natural and Simulated Cognition. McGill University, Montreal.
Koene, R.A. and Takane, Y. (1997). Disciminant Component Pruning. Presented at the Laboratory for Natural and Simulated Cognition. McGill University, Montreal.
Poster PresentationsKoene, R.A. (2009). Neuroprosthetic emulation: What data is needed to replicate accurate personal brain function? Presented at the 2009 Annual Meeting of the Society for Neuroscience. 2009 Neuroscience Meeting Planner. Program No. 389.13. Chicago, IL: Society for Neuroscience, 2009. Online.electronic reprint: abstract PDF (152K) Society for Neuroscience Abstracts reference to the web site of the 2009 Annual Meeting of the Society for Neuroscience
Estep, P. and Koene, R.A. (2009). The roles of real-world corroborative audiovisual data in brain reverse engineering. Presented at the 2009 Annual Meeting of the Society for Neuroscience. 2009 Neuroscience Meeting Planner. Program No. 389.11. Chicago, IL: Society for Neuroscience, 2009. Online.
Nijboer, F., Halder, S., Furdea, S.A., Kleih, S.C., Koene, R.A. and Kubler, A. (2009). The effect of monetary reward and stimulus modality on motivation and performance in a Brain-Computer Interface paradigm based on event-related potentials. Presented at the 2009 Annual Meeting of the Society for Neuroscience. 2009 Neuroscience Meeting Planner. Program No. 289.14. Chicago, IL: Society for Neuroscience, 2009. Online.
Koene, R.A. (2009). Using NETMORPH tools to teach neural and brain development. Presented at the 2009 Annual Meeting of the Society for Neuroscience. 2009 Neuroscience Meeting Planner. Program No. 23.13. Chicago, IL: Society for Neuroscience, 2009. Online.
Koene, R.A. (2009). Toward a Virtual Brain Laboratory: Applications of NETMORPH. Frontiers in Neuroinformatics. Conference Abstract: 2nd INCF Congress of Neuroinformatics. Doi: 10.3389/conf.neuro.11.2009.08.107. Demo. Pilsen, Czech Republic.
van Pelt, J., de Ridder, S., Hoedemaker, S., Postma, F., Koene, R. and van Ooyen, A. (2009). Emerging synaptic connectivity in simulated networks of outgrowing neurons with realistic morphologies using NETMORPH. Frontiers in Neuroinformatics. Conference Abstract: 2nd INCF Congress of Neuroinformatics. Doi: 10.3389/conf.neuro.11.2009.08.040. Pilsen, Czech Republic.
de Ridder, A., van Ooyen, A., Postma, F., Hoedemaker, S., Koene, R.A. and van Pelt, J. (2009). Simulated Networks with Realistic Neuronal Morphologies show Small-World Connectivity. BMC Neuroscience, Proceedings of the Eighteenth Annual Computational Neuroscience Meeting CNS*2009. Vol. 10(supp.1), P5, Paper no.196. Berlin, Germany.
Koene, R.A. (2009). Neuroengineering in alzheimer's disease research: using a virtual brain laboratory. Presented at the Alzheimer's Association 2009 International Conference on Alzheimer's Disease (ICAD2009). Vienna, Austria.
Koene, R.A. (2009). Creating a Culture of Cognitive Health. Presented at the 31st Annual Conference of the Cognitive Science Society. Amsterdam, The Netherlands.
Koene, R.A. and Hasselmo, M.E. (2008). One-shot method of buffering novel spatial content that enables sweeps at choice points during reward-directed navigation. Presented at the 2008 Annual Meeting of the Society for Neuroscience. Washington, DC.
Postma, F., Koene, R.A., van Pelt, J. and van Ooyen, A. (2008). NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic morphology. Frontiers in Neuroinformatics. Conference Abstract: Neuroinformatics 2008. doi: 10.3389/conf.neuro.11.2008.01.089. INCF. Stockholm, Sweden.
Koene, R.A., van Pelt, J. and van Ooyen, A. (2008). Stochastic generation and analysis of large scale neuronal networks with realistic morphology using NETMORPH. Presented at the 6th FENS Forum of European Neuroscience. Geneva, Switzerland.
Koene, R.A. and Hasselmo, M.E. (2007). Biophysical simulation of mechanisms for a persistent firing buffer that is based on intrinsic currents of entorhinal pyramidal cells. Presented at the 2007 Annual Meeting of the Society for Neuroscience. San Diego, CA.
Koene, R.A., van Pelt, J. and van Ooyen, A. (2007). Stochastic neuronal morphogenesis and network development with NETMORPH. Presented at the NWO Computational Life Sciences Meeting 2007. Utrecht, Netherlands.
Koene, R.A and Hasselmo, M.E. (2007). Hippocampal activity may depend on multiple sequence buffers with specific characteristics in layer II of entorhinal cortex. Presented at the Eleventh International Conference on Cognitive and Neural Systems.
Koene, R.A. and Hasselmo, M.E. (2006). A model of reverse reactivation of episodic activity in the hippocampus during idle awake periods. Presented at the 2006 Annual Meeting of the Society for Neuroscience.
Koene, R.A., Green, N., Ramakers, G., van Pelt, J. and van Ooyen, A. (2006). Scope and resolution, simulating large scale neuronal networks to study the effect of morphological detail on emergent large scale patterns of activity. Presented at the NINDS Neural Interfaces Workshop 2006 (The 37th Annual Neural Prosthesis Workshop). Bethesda, Maryland.
Koene, R.A and Hasselmo, M.E. (2006). An integrate-and-fire model of temporal context specific episodic encoding and retrieval in the hippocampal formation. Presented at the Computational and Systems Neuroscience (COSYNE) Meeting 2006.
Koene, R.A and Hasselmo, M.E. (2005). An integrate and fire neuron model of short-term memory with ordered replacement of spike patterns. Presented at the Ninth International Conference on Cognitive and Neural Systems.
Koene, R.A. (2005). An automated method for the generation of connections in a simulated cultured neuronal network with fibre specificity. Presented at the 2005 Computational Life Sciences Meeting of the Netherlands Organization for Scientific Research (NWO). Utrecht, Netherlands.
McGaughy, J.A. and Koene, R.A., Eichenbaum, H.B. and Hasselmo, M.E. (2004). Effects of cholinergic deafferentation of prefrontal cortex on working memory: A convergence of behavioral and modeling results. Presented at the 2004 Annual Meeting of the Society for Neuroscience.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2004). Goal directed behavior guided by an integrate and fire model of mechanisms in prefrontal cortex. Presented at the Annual Meeting of the Boston University Center for Memory and Brain.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2003). Three important roles of theta oscillations in a model of goal-directed spatial navigation. Presented at the Seventh International Conference on Cognitive and Neural Systems.
Koene, R.A., Cannon, R.C. and Hasselmo, M.E. (2002). The importance of theta oscillations in rat hippocampal circuitry for goal-directed spatial navigation. Presented at the 2002 Annual Meeting of the Society for Neuroscience.
Koene, R.A. (2001). Attentional Highlighting and Neuron Recruitment in the Transfer of Memories from Sparse Hippocampal to Dense Neocortical Encoding. Presented at the Fifth International Conference on Cognitive and Neural Systems.
Unpublished Manuscripts
Koene, R.A. (2007). Supplementary materials produced during work on ``NETMORPH: A framework for the stochastic generation of large scale neuronal networks with realistic morphology''. (unpublished supplementary material).
Koene, R.A., Green, N., Ramakers, G., van Pelt, J. and van Ooyen, A. (2007). Reference Paper to: NETMORPH: A framework for the stochastic generation of large scale neuronal networks with realistic morphology. (unpublished).
Koene, R.A. (1998). Meta-Modeling with Structural Equations: Individual Parameter Significance in Spiking Neuron Models. (unpublished manuscript draft).
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